PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G131400.2
Common NamePHAVU_010G131400g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 655aa    MW: 72452.2 Da    PI: 6.3018
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G131400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.6e-08539587348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         +WT  E  +lv++v + G g+W+ I r        Rt  ++k++w+++l
  Phvul.010G131400.2 539 AWTLVEVIKLVEGVSRCGAGRWSEIKRLSFasySYRTSVDLKDKWRNLL 587
                         7**************************99999*99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.948532591IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-11534590IPR009057Homeodomain-like
SMARTSM007178.8E-8536589IPR001005SANT/Myb domain
CDDcd116608.75E-19538588No hitNo description
SuperFamilySSF466891.14E-14538597IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
METVVGIEDN DDGKFEDSGL DRSSSALSSP KQISNPIVYK LVRVEGDGRL VPATDDEVME  60
VGDFLEYENS EMHVVADTGQ SLECISIERS SSGKLRLECS EGSAEADLGK LNAKLQILQK  120
VKEEEKQRIS CGSPVHSHVN VDSQCSADKC PVMDGKVQSE TPYQDNPSIA SSLNYTHSNQ  180
SGSMDQCSRP SEGVIESGSS ASAIHSNLKP DLSMSDGEIC LDKLSIRELH ELFKVTFGRE  240
TTVKDKQWLK RRIAMSLTNS CDVSATNFII KDNQIVRKFV EESSGNMNIS SLISSENMTE  300
EEDINLKDSS AVNACGIDDN QVISEIRLRN QNTEYGLEDE NNETEQRAAK RIRRPTKRYI  360
EELSENESRE QNPRLPISNK SMGLGQVSST SYVRPGRNTF SEVRTYGMRF DSLGGSDVQI  420
PCVSLIRRSR PRKDMASLMK FHPTATSETA KLSNKLIEHS SDAVGEIPDK VFKPRMPAKF  480
HQSPSSEPEK EKQCPVVGTI EPWQELRPKR ADLPGHTSDD NIVTVPTAKG GMRRKHHRAW  540
TLVEVIKLVE GVSRCGAGRW SEIKRLSFAS YSYRTSVDLK DKWRNLLKAS FAMTPAPADE  600
GINSRKHGTA PIPEKILLRV RELAEMNSQV PPNISSNKVA AGAGSVHEGR SGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1426432RRSRPRK
2426433RRSRPRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5607070.0FJ560707.1 Glycine max transcription factor MYB884 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135461.10.0hypothetical protein PHAVU_010G131400g
TrEMBLV7AQ520.0V7AQ52_PHAVU; Uncharacterized protein
STRINGGLYMA07G04160.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-119TRF-like 6